We recommended using Firefox or Google Chrome web browsers for the testing of the GenIE-Sys. Please do not use Microsoft Edge or Internet Explorer.
Manual installation of the following softwares and packages are not needed for the Docker based GenIE-Sys installation. However. following softwares and packages will be needed when you do the standalone Apache based GenIE-Sys installation.
User should know how to open the terminal and installation of Docker and Git softwares.
Docker
Git
To run GenIE-Sys we recommend your host supports the following
PHP version 5.2+
MySQL version 5.6+ or MariaDB version 10.0+
To fulfil the above requirements, we have tested the GenIE-Sys under the following infrastructures.
MAMP/LAMP
Apache, PHP and MySQL standalone servers
Here are the required Perl packages for BLAST plugin. Manual installation of these plugins needed only when you use the MAMP based installation.
# version of the PerlPerl v5.2 or higher is needed# required packagesBio::Coordinate * "VERSION: 1.007001"Bio::FeatureIO * "VERSION: 1.6.905"Bio::SearchIO::blastxml * "VERSION: 1.70"DBI * "VERSION: 1.643"GD::SVG * "VERSION: 0.33"
You can use the following command to test the version of the Perl and the installed packages.
$perl -h$for M in `perldoc -t perllocal|grep Module |sed -e 's/^.*" //'`; do V=`perldoc -t perllocal|awk "/$M/{y=1;next}y" |grep VERSION |head -n 1`; printf "%30s %s\n" "$M" "$V"; done |sort