Requirements

We recommended using Firefox or Google Chrome web browsers for the testing of the GenIE-Sys. Please do not use Microsoft Edge or Internet Explorer.
Manual installation of the following softwares and packages are not needed for the Docker based GenIE-Sys installation. However. following softwares and packages will be needed when you do the standalone Apache based GenIE-Sys installation.
User should know how to open the terminal and installation of Docker and Git softwares.
Docker
Git
To run GenIE-Sys we recommend your host supports the following
PHP version 5.2+
MySQL version 5.6+ or MariaDB version 10.0+
To fulfil the above requirements, we have tested the GenIE-Sys under the following infrastructures.
MAMP/LAMP
Apache, PHP and MySQL standalone servers
BLAST
Here are the required Perl packages for BLAST plugin. Manual installation of these plugins needed only when you use the MAMP based installation.
​
# version of the Perl
Perl v5.2 or higher is needed
​
# required packages
               Bio::Coordinate     *   "VERSION: 1.007001"
                Bio::FeatureIO     *   "VERSION: 1.6.905"
       Bio::SearchIO::blastxml     *   "VERSION: 1.70"
                           DBI     *   "VERSION: 1.643"
                       GD::SVG     *   "VERSION: 0.33"
You can use the following command to test the version of the Perl and the installed packages.
$perl -h
$for M in `perldoc -t perllocal|grep Module |sed -e 's/^.*" //'`; do V=`perldoc -t perllocal|awk "/$M/{y=1;next}y" |grep VERSION |head -n 1`; printf "%30s %s\n" "$M" "$V"; done |sort
​
Getting Started
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Last updated 7 months ago